Variant report

Variant	rs6785766
Chromosome Location	chr3:158831718-158831719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10513534	0.92[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs12496828	1.00[CEU][hapmap];0.92[GIH][hapmap];0.90[MEX][hapmap]
rs12497650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs12635219	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs1392948	0.86[EUR][1000 genomes]
rs1472578	0.90[GIH][hapmap];0.84[TSI][hapmap]
rs1472579	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1472580	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1472581	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501287	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs1501288	0.85[EUR][1000 genomes]
rs1501289	0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs1566548	0.90[CEU][hapmap];0.87[GIH][hapmap];0.92[TSI][hapmap]
rs2062631	0.85[EUR][1000 genomes]
rs4679853	0.86[EUR][1000 genomes]
rs4680490	0.81[EUR][1000 genomes]
rs6441251	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs6772999	0.90[CEU][hapmap]
rs7615549	0.90[CEU][hapmap];0.90[GIH][hapmap];0.92[TSI][hapmap]
rs7615992	0.90[CEU][hapmap]
rs7627683	0.90[CEU][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs7631700	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7634875	0.89[CEU][hapmap]
rs7641814	0.81[EUR][1000 genomes]
rs7646610	0.90[CEU][hapmap];0.87[GIH][hapmap]
rs868067	0.90[CEU][hapmap]
rs885342	0.90[CEU][hapmap];0.87[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs949594	0.85[EUR][1000 genomes]
rs949595	0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs952243	0.90[CEU][hapmap]
rs9815105	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs9816268	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs9816288	0.90[CEU][hapmap];0.90[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs9816422	0.90[CEU][hapmap];0.90[GIH][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs9834630	0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs9852361	0.86[EUR][1000 genomes]
rs9871839	0.87[EUR][1000 genomes]
rs9876582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv491927	chr3:158692653-158952780	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1010336	chr3:158727551-158865644	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1010828	chr3:158802474-158894319	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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