Variant report

Variant	rs67860431
Chromosome Location	chr5:36585363-36585364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4391195	0.86[AFR][1000 genomes]
rs6865986	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6894941	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6895261	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72732520	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881025	chr5:36575021-36613053	Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36583800-36586200	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr5:36584200-36585600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:36584200-36586400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:36584600-36587600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:36584800-36585400	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:36584800-36586200	Enhancers	Brain Substantia Nigra	brain
7	chr5:36584800-36586400	Enhancers	Adipose Nuclei	Adipose
8	chr5:36584800-36590400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:36584800-36590800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:36585200-36590600	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links