Variant report

Variant	rs6786929
Chromosome Location	chr3:159808973-159808974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12493855	0.86[EUR][1000 genomes]
rs2009534	0.86[EUR][1000 genomes]
rs4679870	0.86[EUR][1000 genomes]
rs4680543	0.81[EUR][1000 genomes]
rs4680550	0.81[EUR][1000 genomes]
rs4680551	0.82[EUR][1000 genomes]
rs4680555	0.86[EUR][1000 genomes]
rs6441292	0.81[EUR][1000 genomes]
rs6441293	0.81[EUR][1000 genomes]
rs6441294	0.81[EUR][1000 genomes]
rs6807951	0.86[EUR][1000 genomes]
rs746101	0.86[EUR][1000 genomes]
rs7623472	0.83[EUR][1000 genomes]
rs9290055	0.86[EUR][1000 genomes]
rs9821064	0.85[EUR][1000 genomes]
rs9821775	0.86[EUR][1000 genomes]
rs9842760	0.84[EUR][1000 genomes]
rs9847023	0.86[EUR][1000 genomes]
rs9880666	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	esv13734	chr3:159794041-159814966	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv819439	chr3:159800647-159815768	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159801000-159814600	Weak transcription	Gastric	stomach
2	chr3:159807000-159825000	Weak transcription	Pancreas	Pancrea
3	chr3:159808200-159813200	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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