Variant report

Variant	rs67871277
Chromosome Location	chr5:42453345-42453346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13153060	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs13168764	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13171720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13187542	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17574527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17575164	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28943878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28943880	0.84[EUR][1000 genomes]
rs33939197	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34126503	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34161441	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34305870	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34714947	0.80[AMR][1000 genomes]
rs35331831	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35585211	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35920615	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67005744	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67277863	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67314897	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs67846180	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6885716	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6891036	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72753062	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72753064	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7703669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7716495	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7718962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42443600-42453400	Weak transcription	Liver	Liver
2	chr5:42446400-42453600	Weak transcription	Right Ventricle	heart
3	chr5:42450000-42466800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:42452400-42453400	Weak transcription	Adipose Nuclei	Adipose
5	chr5:42453200-42453400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:42453200-42455000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr5:42453200-42455200	Enhancers	Skeletal Muscle Female	skeletal muscle

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