Variant report

Variant	rs6787449
Chromosome Location	chr3:67905314-67905315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11705841	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447749	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1447753	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1447754	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1447771	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1447772	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1485338	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550915	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17140740	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17140869	0.83[EUR][1000 genomes]
rs1839042	0.80[ASN][1000 genomes]
rs1872433	0.84[EUR][1000 genomes]
rs2361332	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2885251	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34597575	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35040857	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35976744	0.84[EUR][1000 genomes]
rs36112959	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4461437	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4473567	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645147	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4856900	0.89[ASN][1000 genomes]
rs4856914	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4856916	0.80[ASN][1000 genomes]
rs4856931	0.87[EUR][1000 genomes]
rs6763163	0.83[EUR][1000 genomes]
rs6775637	0.83[EUR][1000 genomes]
rs6790710	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7609730	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7629362	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7630186	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7635638	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7642515	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643788	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7649025	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7649034	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7649759	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834720	chr3:67853167-68037201	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1010231	chr3:67894825-68117879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67904000-67906600	Enhancers	Liver	Liver
2	chr3:67904600-67905600	Weak transcription	Pancreas	Pancrea
3	chr3:67905000-67905400	Enhancers	Rectal Mucosa Donor 31	rectum

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