Variant report

Variant	rs6787881
Chromosome Location	chr3:150267103-150267104
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150264211..150267828-chr3:150269131..150272633,7	MCF-7	breast:
2	chr3:150260773..150268334-chr3:150317152..150324883,17	K562	blood:
3	chr3:150265254..150267392-chr3:150344377..150346333,2	K562	blood:
4	chr3:150122822..150130151-chr3:150261910..150267967,8	K562	blood:
5	chr3:150216070..150218049-chr3:150266258..150268754,2	K562	blood:
6	chr3:150089195..150090821-chr3:150265042..150267654,2	MCF-7	breast:
7	chr3:150259884..150269236-chr3:150319275..150325391,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction
ENSG00000120742	Chromatin interaction
ENSG00000198843	Chromatin interaction
ENSG00000144895	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1133494	0.80[AFR][1000 genomes]
rs14434	0.88[AFR][1000 genomes]
rs1915942	0.82[EUR][1000 genomes]
rs2049229	0.80[AFR][1000 genomes]
rs2868946	0.88[AFR][1000 genomes]
rs2868947	0.80[AFR][1000 genomes]
rs4681631	0.82[EUR][1000 genomes]
rs6764672	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6790726	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7374917	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7638500	0.80[AFR][1000 genomes]
rs8052	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9289818	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9289821	0.82[EUR][1000 genomes]
rs954068	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9820529	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9865177	0.82[EUR][1000 genomes]
rs9871517	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6787881	EIF2A	cis	Nerve Tibial	GTEx
rs6787881	EIF2A	cis	Artery Tibial	GTEx
rs6787881	EIF2A	cis	lung	GTEx
rs6787881	EIF2A	cis	Thyroid	GTEx
rs6787881	EIF2A	cis	Artery Aorta	GTEx
rs6787881	EIF2A	cis	Esophagus Muscularis	GTEx
rs6787881	EIF2A	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150265000-150272800	Weak transcription	Spleen	Spleen
2	chr3:150265200-150268600	Weak transcription	Pancreas	Pancrea
3	chr3:150265200-150270800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:150265200-150272800	Weak transcription	Lung	lung
5	chr3:150265200-150273200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:150265200-150299400	Weak transcription	Esophagus	oesophagus
7	chr3:150265200-150302800	Weak transcription	Gastric	stomach
8	chr3:150265400-150270600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:150265400-150270800	Weak transcription	Left Ventricle	heart
10	chr3:150265400-150271200	Weak transcription	Ovary	ovary
11	chr3:150265400-150271600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:150265400-150279600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:150265400-150305800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr3:150265600-150267200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:150265600-150267400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr3:150265600-150267400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:150265600-150267400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:150265600-150269200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:150265600-150269800	Weak transcription	Placenta	Placenta
20	chr3:150265600-150270000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:150265600-150270200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:150265600-150270200	Weak transcription	Brain Angular Gyrus	brain
23	chr3:150265600-150270600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:150265600-150270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:150265600-150271000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:150265600-150271200	Weak transcription	Fetal Muscle Leg	muscle
27	chr3:150265600-150271600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:150265600-150272200	Weak transcription	Thymus	Thymus
29	chr3:150265600-150272400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:150265600-150272400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:150265600-150273600	Weak transcription	Right Atrium	heart
32	chr3:150265600-150284600	Weak transcription	Right Ventricle	heart
33	chr3:150265600-150293400	Weak transcription	Aorta	Aorta
34	chr3:150265600-150294000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:150265600-150304200	Weak transcription	Fetal Brain Male	brain
36	chr3:150265600-150320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:150265600-150320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:150265800-150268400	Weak transcription	Fetal Stomach	stomach
39	chr3:150265800-150270200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr3:150266000-150267400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr3:150266000-150268400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr3:150266000-150270000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:150266000-150270200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:150266000-150270800	Weak transcription	Fetal Intestine Large	intestine
45	chr3:150266000-150271400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:150266000-150271400	Weak transcription	HSMMtube	muscle
47	chr3:150266000-150271600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr3:150266000-150271600	Weak transcription	Fetal Kidney	kidney
49	chr3:150266000-150271600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr3:150266000-150273600	Weak transcription	Brain Substantia Nigra	brain

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