Variant report

Variant	rs67885731
Chromosome Location	chr10:18347490-18347491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11592978	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12251803	0.80[AFR][1000 genomes]
rs1954283	0.81[ASN][1000 genomes]
rs1986480	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2226131	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357784	0.81[AFR][1000 genomes]
rs7078285	0.88[EUR][1000 genomes]
rs72780048	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72780053	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18331600-18348800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:18345800-18347800	Weak transcription	Fetal Lung	lung
3	chr10:18346000-18349800	Enhancers	Fetal Heart	heart
4	chr10:18347000-18347600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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