Variant report

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11928728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12629028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12629074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2102015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2133341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2648008	0.93[ASN][1000 genomes]
rs4544621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55892744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56781265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58633088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6788755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73839305	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs931673	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs931674	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1004470	chr3:69597148-69728231	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69604400-69612400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69604400-69615200	Weak transcription	Spleen	Spleen
3	chr3:69607400-69611400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:69607600-69608600	Enhancers	Brain Hippocampus Middle	brain
5	chr3:69607600-69608600	Enhancers	Brain Substantia Nigra	brain
6	chr3:69607600-69608600	Enhancers	Left Ventricle	heart
7	chr3:69608000-69608600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:69608200-69608600	Enhancers	Adipose Nuclei	Adipose
9	chr3:69608200-69608600	Weak transcription	Right Atrium	heart
10	chr3:69608200-69608600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr3:69608200-69608800	Enhancers	Liver	Liver
12	chr3:69608200-69608800	Enhancers	Brain Anterior Caudate	brain
13	chr3:69608200-69608800	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:69608200-69608800	Enhancers	Fetal Lung	lung
15	chr3:69608200-69608800	Enhancers	Fetal Muscle Leg	muscle
16	chr3:69608200-69609000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:69608200-69610600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr3:69608400-69608600	Enhancers	Brain Angular Gyrus	brain
19	chr3:69608400-69609000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:69608400-69609400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr3:69608400-69615400	Weak transcription	Right Ventricle	heart

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