Variant report

Variant	rs6789002
Chromosome Location	chr3:88026646-88026647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12714696	0.81[EUR][1000 genomes]
rs13074576	0.81[EUR][1000 genomes]
rs1503433	0.81[EUR][1000 genomes]
rs1604699	0.81[EUR][1000 genomes]
rs1835543	0.82[EUR][1000 genomes]
rs2016224	0.81[EUR][1000 genomes]
rs2099229	0.81[EUR][1000 genomes]
rs2880801	0.81[EUR][1000 genomes]
rs2880802	0.81[EUR][1000 genomes]
rs4858925	0.81[EUR][1000 genomes]
rs4858969	0.81[EUR][1000 genomes]
rs4858971	0.82[EUR][1000 genomes]
rs6778211	0.81[EUR][1000 genomes]
rs6781226	0.81[EUR][1000 genomes]
rs7629565	0.81[EUR][1000 genomes]
rs7630716	0.81[EUR][1000 genomes]
rs7652406	0.81[EUR][1000 genomes]
rs9855839	0.81[EUR][1000 genomes]
rs9861809	0.81[EUR][1000 genomes]
rs9863076	0.81[EUR][1000 genomes]
rs9878862	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88014200-88027000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:88020600-88037000	Weak transcription	K562	blood
3	chr3:88020800-88026800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:88022000-88027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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