Variant report

Variant	rs67899457
Chromosome Location	chr14:104060066-104060067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10431750	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10459574	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11844466	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11851000	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11851616	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12887734	0.85[AMR][1000 genomes]
rs12889403	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12889721	0.80[AMR][1000 genomes]
rs12889731	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12890820	0.83[ASN][1000 genomes]
rs12892038	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12894729	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2274267	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2296482	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2403197	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2896487	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34026011	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34186780	0.82[ASN][1000 genomes]
rs34843146	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34896432	0.82[ASN][1000 genomes]
rs35026580	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35229468	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35496194	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35498576	0.82[ASN][1000 genomes]
rs4525427	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4906336	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4906337	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4906338	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4906347	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55751606	0.82[ASN][1000 genomes]
rs57072546	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58033365	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60249782	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7140568	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71417868	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71417869	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7148456	0.82[ASN][1000 genomes]
rs729438	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8017628	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8017993	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902299	chr14:103967504-104061646	Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
7	nsv902304	chr14:103979953-104061646	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv902305	chr14:103979953-104073551	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv566022	chr14:104007555-104092789	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104030800-104073200	Weak transcription	Small Intestine	intestine
2	chr14:104035400-104060400	Weak transcription	Fetal Brain Male	brain
3	chr14:104041000-104063200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:104041800-104060600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:104043800-104060200	Weak transcription	Stomach Mucosa	stomach
6	chr14:104045600-104060400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:104045600-104060600	Weak transcription	NHDF-Ad	bronchial
8	chr14:104045600-104067200	Weak transcription	Primary B cells from cord blood	blood
9	chr14:104045800-104060400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:104045800-104064200	Weak transcription	Hela-S3	cervix
11	chr14:104048400-104060600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:104049000-104060600	Weak transcription	Colonic Mucosa	Colon
13	chr14:104049000-104060600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr14:104050600-104060400	Weak transcription	HSMMtube	muscle
15	chr14:104051200-104060200	Weak transcription	HepG2	liver
16	chr14:104051200-104060400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:104055800-104060600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:104055800-104067000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:104055800-104073000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:104056200-104060200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:104056800-104061200	Weak transcription	Dnd41	blood
22	chr14:104056800-104064000	Weak transcription	A549	lung
23	chr14:104057000-104070800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:104057200-104061600	Weak transcription	Esophagus	oesophagus
25	chr14:104057400-104060400	Weak transcription	Fetal Brain Female	brain
26	chr14:104057400-104060600	Weak transcription	Ovary	ovary
27	chr14:104057400-104061600	Weak transcription	NHLF	lung
28	chr14:104057400-104062000	Weak transcription	Thymus	Thymus
29	chr14:104057600-104060400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr14:104057600-104060400	Weak transcription	Lung	lung
31	chr14:104057600-104061400	Weak transcription	Fetal Lung	lung
32	chr14:104057600-104063600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:104057600-104063800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr14:104057600-104064000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:104057600-104064200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:104057600-104064200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr14:104057600-104064400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr14:104057600-104073400	Weak transcription	Primary T cells from cord blood	blood
39	chr14:104057800-104060400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:104057800-104060400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr14:104057800-104060400	Weak transcription	Brain Germinal Matrix	brain
42	chr14:104057800-104060400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr14:104057800-104060400	Weak transcription	Spleen	Spleen
44	chr14:104057800-104060400	Weak transcription	HSMM	muscle
45	chr14:104057800-104060600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:104057800-104061800	Weak transcription	Gastric	stomach
47	chr14:104057800-104062400	Weak transcription	Aorta	Aorta
48	chr14:104057800-104063800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:104057800-104064200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr14:104057800-104064200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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