Variant report

Variant	rs6790095
Chromosome Location	chr3:42888204-42888205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr3:42888184-42888455	HepG2	liver:	n/a	n/a
2	FOXA2	chr3:42888136-42888432	HepG2	liver:	n/a	n/a
3	STAT3	chr3:42887829-42888309	MCF10A-Er-Src	breast:	n/a	chr3:42887865-42887876
4	MAFK	chr3:42888180-42888485	HepG2	liver:	n/a	n/a
5	EP300	chr3:42888128-42888529	HepG2	liver:	n/a	n/a
6	MAFK	chr3:42888202-42888957	K562	blood:	n/a	n/a
7	CEBPB	chr3:42888143-42888379	HepG2	liver:	n/a	n/a
8	FOXA1	chr3:42888050-42888489	HepG2	liver:	n/a	n/a
9	FOXA1	chr3:42888105-42888456	HepG2	liver:	n/a	n/a
10	STAT3	chr3:42887370-42888245	MCF10A-Er-Src	breast:	n/a	chr3:42887865-42887876
11	EP300	chr3:42887999-42888542	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:42887948..42889807-chr3:42892179..42894180,2	K562	blood:
2	chr3:42883358..42885029-chr3:42888181..42889753,2	K562	blood:
3	chr3:42881286..42884459-chr3:42886428..42891439,4	K562	blood:

Variant related genes	Relation type
ACKR2	TF binding region
ENSG00000144648	Chromatin interaction
ENSG00000235288	Chromatin interaction

rs_ID	r²[population]
rs6763528	1.00[CEU][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.83[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42885000-42888400	Enhancers	Liver	Liver
2	chr3:42885000-42891200	Enhancers	K562	blood
3	chr3:42885600-42895800	Weak transcription	Aorta	Aorta
4	chr3:42885800-42888400	Weak transcription	Stomach Mucosa	stomach
5	chr3:42886000-42890600	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:42886200-42888600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:42886200-42889000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:42886600-42889000	Weak transcription	Lung	lung
9	chr3:42886600-42889200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:42886600-42892000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:42887000-42889000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:42887000-42889600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr3:42887000-42890000	Enhancers	Placenta	Placenta
14	chr3:42887200-42889600	Enhancers	HSMMtube	muscle
15	chr3:42887400-42888400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:42887400-42888400	Enhancers	Ovary	ovary
17	chr3:42887400-42888600	Enhancers	Rectal Smooth Muscle	rectum
18	chr3:42887400-42888600	Enhancers	HSMM	muscle
19	chr3:42887400-42889000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:42887400-42889400	Enhancers	Adipose Nuclei	Adipose
21	chr3:42887400-42889400	Enhancers	Spleen	Spleen
22	chr3:42887400-42889600	Enhancers	Fetal Muscle Leg	muscle
23	chr3:42887600-42888400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr3:42887600-42888600	Enhancers	Brain Hippocampus Middle	brain
25	chr3:42887600-42888600	Enhancers	Right Atrium	heart
26	chr3:42887600-42888800	Enhancers	Fetal Heart	heart
27	chr3:42887600-42889000	Enhancers	Fetal Stomach	stomach
28	chr3:42887600-42889000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr3:42887600-42889200	Enhancers	Colon Smooth Muscle	Colon
30	chr3:42887600-42889400	Enhancers	Left Ventricle	heart
31	chr3:42887600-42889600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr3:42887600-42889600	Enhancers	Fetal Muscle Trunk	muscle
33	chr3:42887800-42888400	Enhancers	Right Ventricle	heart
34	chr3:42887800-42888600	Enhancers	Fetal Intestine Small	intestine
35	chr3:42887800-42888600	Weak transcription	Fetal Kidney	kidney
36	chr3:42887800-42888600	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr3:42887800-42889600	Enhancers	Primary hematopoietic stem cells	blood
38	chr3:42887800-42889800	Enhancers	Primary B cells from cord blood	blood
39	chr3:42887800-42890000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:42888000-42888400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr3:42888000-42888400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr3:42888000-42889200	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr3:42888000-42889400	Flanking Active TSS	HepG2	liver
44	chr3:42888000-42889600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr3:42888200-42888800	Enhancers	GM12878-XiMat	blood
46	chr3:42888200-42889200	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr3:42888200-42889200	Enhancers	Placenta Amnion	Placenta Amnion
48	chr3:42888200-42889200	Enhancers	Stomach Smooth Muscle	stomach
49	chr3:42888200-42889600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:42888200-42892400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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