Variant report

Variant	rs679026
Chromosome Location	chr9:27120780-27120781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10738763	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs10967715	1.00[JPT][hapmap]
rs10967716	1.00[JPT][hapmap]
rs2782416	1.00[JPT][hapmap]
rs630023	1.00[JPT][hapmap]
rs657867	1.00[JPT][hapmap]
rs677534	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs680739	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27110400-27122000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:27110400-27123200	Weak transcription	Fetal Lung	lung
3	chr9:27111200-27122000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:27111400-27124200	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:27112400-27124200	Weak transcription	Spleen	Spleen
6	chr9:27117800-27122000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:27118000-27122000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:27118000-27123200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:27118000-27123800	Weak transcription	Psoas Muscle	Psoas
10	chr9:27118200-27123000	Weak transcription	NHEK	skin
11	chr9:27118400-27123000	Weak transcription	Fetal Stomach	stomach
12	chr9:27118600-27123200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:27118600-27123200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:27118600-27124000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:27118600-27124200	Weak transcription	Esophagus	oesophagus
16	chr9:27118800-27124000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:27119000-27124600	Weak transcription	NHDF-Ad	bronchial
18	chr9:27119200-27122200	Weak transcription	Adipose Nuclei	Adipose
19	chr9:27119200-27122200	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:27119400-27120800	Enhancers	Lung	lung
21	chr9:27119400-27124000	Weak transcription	NHLF	lung
22	chr9:27119400-27124200	Weak transcription	HMEC	breast
23	chr9:27119600-27124200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:27119600-27124200	Weak transcription	Hela-S3	cervix
25	chr9:27119600-27124400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:27119600-27124400	Weak transcription	A549	lung
27	chr9:27119600-27124600	Weak transcription	Stomach Mucosa	stomach
28	chr9:27119800-27120800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:27119800-27123200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:27119800-27124000	Weak transcription	NH-A	brain
31	chr9:27120000-27123200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:27120000-27123200	Weak transcription	Osteobl	bone
33	chr9:27120000-27124200	Weak transcription	HSMM	muscle
34	chr9:27120200-27120800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr9:27120200-27123000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:27120400-27120800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:27120400-27121000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:27120400-27122000	Weak transcription	HSMMtube	muscle
39	chr9:27120600-27124000	Weak transcription	HUVEC	blood vessel
40	chr9:27120600-27124200	Weak transcription	Left Ventricle	heart
41	chr9:27120600-27124400	Weak transcription	Right Atrium	heart

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