Variant report

Variant	rs6790851
Chromosome Location	chr3:34683998-34683999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11129600	0.81[ASN][1000 genomes]
rs28881937	0.85[EUR][1000 genomes]
rs4440076	0.84[EUR][1000 genomes]
rs73060667	0.88[ASN][1000 genomes]
rs73060691	0.89[ASN][1000 genomes]
rs73062644	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820420	chr3:34662157-34708263	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv1822284	chr3:34683998-34692545	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv519548	chr3:34683998-34718800	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv1816528	chr3:34683998-34757534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6790851	LRRFIP2	cis	parietal	SCAN
rs6790851	STAC	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34683600-34684000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:34683600-34684000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr3:34683800-34684000	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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