Variant report

Variant	rs6791206
Chromosome Location	chr3:61236328-61236329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1093194	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130836	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1524020	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1524021	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1996958	1.00[JPT][hapmap]
rs2689936	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4315681	0.95[CEU][hapmap];0.85[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4453834	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4688167	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6802718	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7635515	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9812415	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9817853	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9831680	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9858223	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs9862543	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9873085	0.90[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876866	chr3:61054494-61310328	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1000378	chr3:61103229-61238089	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv876868	chr3:61145050-61282503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv532626	chr3:61159646-61388418	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1008399	chr3:61176965-61461349	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61230600-61236800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:61233200-61236600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:61233200-61236600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:61235200-61236400	Active TSS	GM12878-XiMat	blood
5	chr3:61235200-61236600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:61235400-61236400	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr3:61235400-61237000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:61235400-61237400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr3:61235400-61237800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr3:61235600-61236400	Enhancers	Fetal Brain Male	brain
11	chr3:61235600-61236600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:61235600-61236600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:61235600-61236600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:61235600-61236600	Enhancers	Gastric	stomach
15	chr3:61235600-61237000	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr3:61235600-61237000	Flanking Active TSS	Fetal Thymus	thymus
17	chr3:61235600-61237000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr3:61235600-61237800	Active TSS	H9 Cell Line	embryonic stem cell
19	chr3:61235600-61237800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr3:61235600-61237800	Active TSS	Left Ventricle	heart
21	chr3:61235600-61238000	Active TSS	Colonic Mucosa	Colon
22	chr3:61235600-61238000	Active TSS	A549	lung
23	chr3:61235600-61238200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:61235800-61236400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:61235800-61236400	Flanking Active TSS	Colon Smooth Muscle	Colon
26	chr3:61235800-61236400	Active TSS	HMEC	breast
27	chr3:61235800-61236600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:61235800-61236600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:61235800-61236600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:61235800-61236600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:61235800-61236600	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr3:61235800-61236600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr3:61235800-61236800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr3:61235800-61236800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr3:61235800-61236800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr3:61235800-61236800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:61235800-61236800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:61235800-61236800	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr3:61235800-61236800	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr3:61235800-61236800	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr3:61235800-61237000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
42	chr3:61235800-61237000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr3:61235800-61237000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr3:61235800-61237000	Flanking Active TSS	Dnd41	blood
45	chr3:61235800-61237600	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr3:61235800-61237800	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr3:61235800-61237800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:61235800-61238000	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr3:61235800-61238000	Active TSS	Fetal Brain Female	brain
50	chr3:61235800-61238000	Active TSS	Psoas Muscle	Psoas

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