Variant report

Variant	rs6791556
Chromosome Location	chr3:143264183-143264184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13098454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13099818	0.93[CEU][hapmap];0.82[LWK][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs1371923	0.81[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs1967350	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839641	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440178	0.94[AFR][1000 genomes]
rs6763510	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143248400-143276800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr3:143250200-143269600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:143252200-143269400	Weak transcription	Placenta	Placenta
4	chr3:143255600-143276800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:143255800-143267200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:143255800-143271800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:143256000-143305600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:143256200-143268000	Weak transcription	Brain Substantia Nigra	brain
9	chr3:143256400-143266800	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:143256400-143270000	Weak transcription	Spleen	Spleen
11	chr3:143256600-143264400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr3:143256600-143275000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:143256800-143269400	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:143256800-143269800	Weak transcription	Esophagus	oesophagus
15	chr3:143256800-143277000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:143257200-143277800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:143257600-143264200	Weak transcription	Dnd41	blood
18	chr3:143257600-143270000	Weak transcription	Ovary	ovary
19	chr3:143258400-143267200	Weak transcription	Fetal Lung	lung
20	chr3:143258400-143269000	Weak transcription	Adipose Nuclei	Adipose
21	chr3:143258400-143269800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:143258400-143271400	Weak transcription	Fetal Stomach	stomach
23	chr3:143258600-143268800	Weak transcription	NHDF-Ad	bronchial
24	chr3:143258600-143270200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:143259800-143266600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:143261200-143270400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:143261600-143269200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:143262000-143279200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:143262800-143269800	Weak transcription	Brain Anterior Caudate	brain
30	chr3:143263000-143269000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:143263200-143277000	Weak transcription	Gastric	stomach
32	chr3:143263600-143264200	Weak transcription	Left Ventricle	heart
33	chr3:143263600-143264400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:143263600-143264400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr3:143263800-143272200	Strong transcription	Primary T cells from cord blood	blood
36	chr3:143264000-143264400	Weak transcription	Small Intestine	intestine
37	chr3:143264000-143264600	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr3:143264000-143272000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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