Variant report

Variant	rs6792013
Chromosome Location	chr3:118893306-118893307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2903300	0.95[EUR][1000 genomes]
rs4266184	0.95[EUR][1000 genomes]
rs4299470	0.95[EUR][1000 genomes]
rs4444702	0.95[EUR][1000 genomes]
rs4446195	0.95[EUR][1000 genomes]
rs4446196	0.91[EUR][1000 genomes]
rs4544604	0.93[EUR][1000 genomes]
rs4687966	0.95[EUR][1000 genomes]
rs4687969	0.95[EUR][1000 genomes]
rs4687971	0.84[EUR][1000 genomes]
rs4687975	0.95[EUR][1000 genomes]
rs6438486	0.95[EUR][1000 genomes]
rs6438491	0.95[EUR][1000 genomes]
rs6438498	0.95[EUR][1000 genomes]
rs6802690	0.95[EUR][1000 genomes]
rs72955041	0.83[EUR][1000 genomes]
rs9816004	0.95[EUR][1000 genomes]
rs9823555	0.93[EUR][1000 genomes]
rs9864127	0.93[EUR][1000 genomes]
rs9864893	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829692	chr3:118727772-118901711	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118884000-118914200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:118890200-118894400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:118890200-118900600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:118890400-118894800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:118892400-118893400	Bivalent/Poised TSS	Fetal Stomach	stomach
6	chr3:118892600-118893400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:118892600-118894400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:118892600-118894800	Weak transcription	Placenta	Placenta
9	chr3:118893000-118894200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:118893000-118895600	Weak transcription	Stomach Mucosa	stomach
11	chr3:118893200-118894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:118893200-118894600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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