Variant report

Variant	rs6792049
Chromosome Location	chr3:156353161-156353162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10428096	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10454220	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4273327	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6792049	CCNL1	cis	cerebellum	SCAN
rs6792049	RNF130	trans	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156347600-156353800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:156348800-156360600	Weak transcription	Right Atrium	heart
3	chr3:156349400-156361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156349600-156354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:156349600-156355200	Weak transcription	NHEK	skin
6	chr3:156350200-156354400	Enhancers	K562	blood
7	chr3:156350800-156353200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:156350800-156354000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:156351600-156354000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:156351800-156356600	Weak transcription	Osteobl	bone
11	chr3:156351800-156361000	Weak transcription	Fetal Stomach	stomach
12	chr3:156352000-156353800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:156352200-156353800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:156352600-156353200	Enhancers	GM12878-XiMat	blood
15	chr3:156352600-156353400	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:156352600-156353400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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