Variant report

Variant	rs6792241
Chromosome Location	chr3:56785556-56785557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2171855	0.95[CEU][hapmap];0.80[GIH][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap]
rs3732509	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4435603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825091	0.81[ASW][hapmap]
rs9851432	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56757000-56786400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:56757600-56792200	Weak transcription	Hela-S3	cervix
3	chr3:56758600-56792200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:56759800-56790400	Strong transcription	Dnd41	blood
5	chr3:56760800-56788800	Strong transcription	Fetal Thymus	thymus
6	chr3:56762000-56788400	Weak transcription	Colonic Mucosa	Colon
7	chr3:56763800-56789000	Weak transcription	Small Intestine	intestine
8	chr3:56763800-56790200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:56763800-56792800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:56764000-56786600	Weak transcription	Aorta	Aorta
11	chr3:56764000-56788800	Weak transcription	Fetal Heart	heart
12	chr3:56764000-56789000	Weak transcription	Psoas Muscle	Psoas
13	chr3:56764000-56793400	Weak transcription	Gastric	stomach
14	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
15	chr3:56766200-56788200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:56766600-56785800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:56767400-56792600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:56768400-56797600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:56770800-56787200	Strong transcription	Primary T cells from cord blood	blood
20	chr3:56774600-56787400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:56775000-56792600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:56775800-56788800	Strong transcription	Thymus	Thymus
23	chr3:56777200-56787400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:56777400-56788400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr3:56778400-56786400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:56779000-56792600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:56779600-56786200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:56779600-56788400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:56779600-56789200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:56779800-56788400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:56779800-56788400	Weak transcription	Ovary	ovary
32	chr3:56779800-56788800	Weak transcription	Esophagus	oesophagus
33	chr3:56779800-56789000	Weak transcription	Right Ventricle	heart
34	chr3:56780000-56787800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:56781200-56787600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:56781600-56792200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:56781600-56795200	Weak transcription	Brain Germinal Matrix	brain
38	chr3:56781800-56785800	ZNF genes & repeats	GM12878-XiMat	blood
39	chr3:56781800-56787600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:56782000-56788800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr3:56782000-56788800	Weak transcription	Spleen	Spleen
42	chr3:56782200-56795200	Weak transcription	Lung	lung
43	chr3:56782600-56787600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:56783000-56785600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
45	chr3:56783000-56787200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr3:56783200-56788200	Strong transcription	Left Ventricle	heart
47	chr3:56783200-56789000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:56783400-56785600	Strong transcription	HUVEC	blood vessel
49	chr3:56783400-56785800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:56783400-56788400	Genic enhancers	Primary T helper cells PMA-I stimulated	--

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