Variant report

Variant	rs6792269
Chromosome Location	chr3:142958091-142958092
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142955679..142958275-chr3:142964132..142966713,2	K562	blood:
2	chr3:142956744..142958765-chr3:142965944..142967632,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12630207	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12633505	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6791707	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs73006224	0.84[AFR][1000 genomes]
rs7627815	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9842703	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv34280	chr3:142887460-142962075	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv818171	chr3:142894411-142960273	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1009573	chr3:142896048-142959777	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757014	chr3:142905661-142964373	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142954000-142958400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:142954800-142962000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:142955200-142972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:142956200-142958400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:142956400-142958200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:142956400-142959800	Weak transcription	Fetal Stomach	stomach
7	chr3:142956400-142964600	Weak transcription	K562	blood
8	chr3:142956600-142959200	Weak transcription	Primary T cells from cord blood	blood
9	chr3:142956600-142959800	Weak transcription	Fetal Lung	lung
10	chr3:142956600-142966000	Weak transcription	Fetal Kidney	kidney
11	chr3:142957000-142958800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:142957000-142961800	Enhancers	HUVEC	blood vessel
13	chr3:142957400-142959000	Weak transcription	Fetal Thymus	thymus
14	chr3:142957600-142958400	Enhancers	HSMM	muscle
15	chr3:142957600-142958400	Enhancers	HSMMtube	muscle
16	chr3:142957600-142958600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:142957600-142958600	Enhancers	Placenta	Placenta
18	chr3:142957800-142958400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:142957800-142958400	Enhancers	NH-A	brain
20	chr3:142957800-142958400	Enhancers	NHDF-Ad	bronchial
21	chr3:142957800-142958600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:142957800-142965800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:142958000-142958200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:142958000-142958400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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