Variant report

Variant	rs679233
Chromosome Location	chr18:8839663-8839664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8834969..8836760-chr18:8839023..8841481,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11663879	0.92[ASN][1000 genomes]
rs11664325	0.85[ASN][1000 genomes]
rs594490	1.00[ASN][1000 genomes]
rs617061	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv833584	chr18:8728616-8904213	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv909363	chr18:8775184-8858086	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8826400-8841600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr18:8832800-8841200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr18:8835800-8844200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr18:8836000-8841600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:8836200-8841600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr18:8837800-8842000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:8838800-8839800	Enhancers	Stomach Mucosa	stomach
8	chr18:8839000-8839800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr18:8839000-8839800	Enhancers	Left Ventricle	heart
10	chr18:8839000-8839800	Enhancers	HSMMtube	muscle
11	chr18:8839000-8840200	Enhancers	Colon Smooth Muscle	Colon
12	chr18:8839000-8840200	Enhancers	Fetal Muscle Leg	muscle
13	chr18:8839200-8839800	Enhancers	Brain Germinal Matrix	brain
14	chr18:8839200-8839800	Enhancers	Rectal Smooth Muscle	rectum
15	chr18:8839400-8839800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr18:8839400-8840200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr18:8839400-8840200	Enhancers	Fetal Stomach	stomach
18	chr18:8839600-8839800	Enhancers	Brain Angular Gyrus	brain
19	chr18:8839600-8841200	Weak transcription	Ovary	ovary
20	chr18:8839600-8844600	Weak transcription	Right Ventricle	heart
21	chr18:8839600-8844800	Weak transcription	Fetal Brain Male	brain
22	chr18:8839600-8845000	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links