Variant report

Variant	rs6792357
Chromosome Location	chr3:179663300-179663301
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11917103	0.93[AFR][1000 genomes]
rs58950270	0.84[AMR][1000 genomes]
rs59159498	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61695027	0.92[AMR][1000 genomes]
rs6770479	0.92[AFR][1000 genomes]
rs6795496	0.94[AFR][1000 genomes]
rs6807998	0.94[AFR][1000 genomes]
rs73055498	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179656600-179664200	Strong transcription	Dnd41	blood
2	chr3:179660400-179667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:179660600-179666400	Weak transcription	Fetal Kidney	kidney
4	chr3:179660600-179666600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:179660600-179666800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:179660600-179667400	Weak transcription	Thymus	Thymus
7	chr3:179660600-179680800	Weak transcription	Pancreas	Pancrea
8	chr3:179660800-179663800	Enhancers	Brain Hippocampus Middle	brain
9	chr3:179660800-179664800	Enhancers	Brain Substantia Nigra	brain
10	chr3:179661200-179664200	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:179661200-179666000	Weak transcription	Fetal Thymus	thymus
12	chr3:179661200-179667400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:179661200-179671400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:179661400-179666200	Weak transcription	Brain Anterior Caudate	brain
15	chr3:179661600-179664200	Enhancers	Brain Angular Gyrus	brain
16	chr3:179662400-179663600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:179663000-179663400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:179663200-179663400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr3:179663200-179663600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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