Variant report

Variant	rs6792692
Chromosome Location	chr3:113000284-113000285
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112994340..112996390-chr3:112999455..113002856,3	MCF-7	breast:
2	chr3:112998546..113000048-chr3:113000099..113002226,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16860709	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs35536878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57661011	1.00[AMR][1000 genomes]
rs59388346	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624197	0.85[AMR][1000 genomes]
rs7642450	0.85[AMR][1000 genomes]
rs9682014	0.85[AMR][1000 genomes]
rs9682696	0.92[YRI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv877348	chr3:112914756-113012509	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112984800-113016400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:112988000-113003000	Strong transcription	Placenta Amnion	Placenta Amnion
3	chr3:112990400-113036000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:112990600-113004000	Weak transcription	NHEK	skin
5	chr3:112991800-113006400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:112993800-113036000	Weak transcription	Right Ventricle	heart
7	chr3:112995200-113001200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:112995200-113016000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:112995200-113022400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:112995400-113006000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:112995400-113006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:112995400-113024000	Weak transcription	Aorta	Aorta
13	chr3:112995400-113035800	Weak transcription	Lung	lung
14	chr3:112995600-113006400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:112995600-113008400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:112995800-113004000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:112995800-113006600	Weak transcription	Fetal Brain Male	brain
18	chr3:112995800-113013000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:112995800-113035800	Weak transcription	Thymus	Thymus
20	chr3:112996000-113005800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:112996000-113025400	Weak transcription	Small Intestine	intestine
22	chr3:112996200-113000400	Weak transcription	Stomach Mucosa	stomach
23	chr3:112996200-113000400	Strong transcription	NHDF-Ad	bronchial
24	chr3:112996200-113001200	Strong transcription	Fetal Lung	lung
25	chr3:112996200-113002000	Weak transcription	NH-A	brain
26	chr3:112996200-113003000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:112996200-113004400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:112996200-113005800	Weak transcription	Osteobl	bone
29	chr3:112996200-113034400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:112996400-113003600	Weak transcription	Brain Angular Gyrus	brain
31	chr3:112996400-113004600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:112996400-113046400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr3:112996600-113004200	Strong transcription	Colon Smooth Muscle	Colon
34	chr3:112996800-113002000	Strong transcription	Fetal Intestine Large	intestine
35	chr3:112996800-113003200	Strong transcription	Esophagus	oesophagus
36	chr3:112996800-113004200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:112997000-113001400	Strong transcription	Ovary	ovary
38	chr3:112997000-113003000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:112997000-113003200	Strong transcription	Fetal Brain Female	brain
40	chr3:112997000-113003400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr3:112997000-113004000	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr3:112997000-113004000	Strong transcription	Fetal Muscle Leg	muscle
43	chr3:112997000-113005200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:112997000-113006200	Strong transcription	Fetal Intestine Small	intestine
45	chr3:112997200-113001200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:112997200-113003600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:112997200-113005400	Strong transcription	Rectal Smooth Muscle	rectum
48	chr3:112997200-113036200	Weak transcription	Spleen	Spleen
49	chr3:112997400-113000800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:112997400-113003800	Strong transcription	Stomach Smooth Muscle	stomach

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