Variant report

Variant	rs67933773
Chromosome Location	chr10:61628446-61628447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61628076..61632189-chr10:61632717..61638646,7	K562	blood:
2	chr10:61627957..61629887-chr10:61630516..61633245,2	MCF-7	breast:
3	chr10:61628053..61630048-chr10:61661857..61663658,2	K562	blood:
4	chr10:61628363..61632189-chr10:61637394..61643761,6	K562	blood:
5	chr10:61628053..61631509-chr10:61662158..61666953,4	K562	blood:
6	chr10:61628330..61633371-chr10:61664622..61667776,4	MCF-7	breast:
7	chr10:61623680..61630815-chr10:61664299..61668134,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16914297	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61333185	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs67498166	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7072298	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094181	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7097246	0.98[EUR][1000 genomes]
rs72809579	0.92[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61593200-61629400	Weak transcription	Lung	lung
3	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:61614200-61629400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:61618000-61632600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:61618400-61628600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:61618600-61633200	Weak transcription	HSMM	muscle
8	chr10:61621200-61630200	Weak transcription	Fetal Stomach	stomach
9	chr10:61624200-61630400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:61624400-61630400	Enhancers	Pancreas	Pancrea
11	chr10:61624400-61632000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:61624600-61631200	Weak transcription	Fetal Lung	lung
13	chr10:61624800-61628600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:61624800-61633000	Weak transcription	Brain Germinal Matrix	brain
15	chr10:61624800-61641000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:61625000-61628800	Weak transcription	Right Ventricle	heart
17	chr10:61625000-61628800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:61625000-61629400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:61625000-61629400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:61625000-61629400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:61625000-61632000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:61625000-61632000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:61625000-61632600	Weak transcription	Ovary	ovary
24	chr10:61625000-61638800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:61625200-61629800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:61625200-61631600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:61625200-61632000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:61625200-61639200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:61625400-61631600	Weak transcription	Primary B cells from cord blood	blood
31	chr10:61625400-61631600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:61625600-61629400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:61625600-61631400	Weak transcription	GM12878-XiMat	blood
34	chr10:61625600-61631600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:61625800-61628800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:61625800-61632600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:61626000-61631600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:61626000-61631800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:61626000-61632200	Weak transcription	NHEK	skin
40	chr10:61626000-61632400	Weak transcription	Adipose Nuclei	Adipose
41	chr10:61626200-61631400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:61626400-61629400	Weak transcription	Left Ventricle	heart
43	chr10:61626400-61629800	Enhancers	Stomach Mucosa	stomach
44	chr10:61626400-61631400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:61626400-61632000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:61626600-61629600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr10:61626600-61629600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:61626600-61631800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:61626800-61629600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:61626800-61629800	Enhancers	Small Intestine	intestine

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