Variant report

Variant	rs6793490
Chromosome Location	chr3:154781852-154781853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11923608	1.00[EUR][1000 genomes]
rs3773906	1.00[EUR][1000 genomes]
rs55954373	1.00[EUR][1000 genomes]
rs56072333	1.00[EUR][1000 genomes]
rs57231033	1.00[EUR][1000 genomes]
rs58007166	1.00[EUR][1000 genomes]
rs58662380	1.00[EUR][1000 genomes]
rs60197267	1.00[EUR][1000 genomes]
rs60339637	1.00[EUR][1000 genomes]
rs60995161	1.00[EUR][1000 genomes]
rs61064256	1.00[EUR][1000 genomes]
rs61281054	1.00[EUR][1000 genomes]
rs61489236	1.00[EUR][1000 genomes]
rs61761163	0.86[EUR][1000 genomes]
rs6770028	1.00[EUR][1000 genomes]
rs6799870	1.00[EUR][1000 genomes]
rs73874461	1.00[EUR][1000 genomes]
rs73874463	1.00[EUR][1000 genomes]
rs73874467	1.00[EUR][1000 genomes]
rs73874471	1.00[EUR][1000 genomes]
rs73874479	1.00[EUR][1000 genomes]
rs73874488	1.00[EUR][1000 genomes]
rs73874491	1.00[EUR][1000 genomes]
rs73874493	1.00[EUR][1000 genomes]
rs73874497	1.00[EUR][1000 genomes]
rs7632185	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868930	chr3:154076125-154820242	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	esv3407893	chr3:154780208-154782456	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv3423532	chr3:154780608-154782006	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154774600-154788800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:154778600-154782400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:154778600-154787000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:154781600-154782200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:154781600-154782600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:154781600-154783800	Enhancers	K562	blood
7	chr3:154781600-154784600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:154781800-154784800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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