Variant report

Variant	rs6794283
Chromosome Location	chr3:151046994-151046995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6775648	1.00[AMR][1000 genomes]
rs7615865	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151044400-151047000	Active TSS	Brain Hippocampus Middle	brain
2	chr3:151045000-151047200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:151045000-151047200	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr3:151045200-151047000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr3:151045200-151047600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:151045400-151047400	Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr3:151045400-151047800	Active TSS	Primary monocytes fromperipheralblood	blood
8	chr3:151045600-151047200	Active TSS	Primary T cells from cord blood	blood
9	chr3:151045600-151047800	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr3:151045600-151056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:151045600-151063600	Weak transcription	Brain Angular Gyrus	brain
12	chr3:151046200-151047000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:151046200-151047400	Active TSS	Monocytes-CD14+_RO01746	blood
14	chr3:151046400-151047000	Active TSS	Primary B cells from cord blood	blood
15	chr3:151046600-151047000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:151046600-151047000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:151046600-151047000	Active TSS	Fetal Muscle Leg	muscle
18	chr3:151046800-151047000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:151046800-151047000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:151046800-151047000	Enhancers	Brain Anterior Caudate	brain
21	chr3:151046800-151047200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:151046800-151047800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:151046800-151047800	Weak transcription	Adipose Nuclei	Adipose
24	chr3:151046800-151048200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:151046800-151049000	Weak transcription	Right Atrium	heart

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