Variant report

Variant	rs6794828
Chromosome Location	chr3:101147894-101147895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10936623	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13317376	0.87[AMR][1000 genomes]
rs13317377	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4264710	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4264711	0.83[AMR][1000 genomes]
rs4513431	0.81[AMR][1000 genomes]
rs6806203	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6809800	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9847602	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6794828	SENP7	cis	Skin Sun Exposed Lower leg	GTEx
rs6794828	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101107200-101161200	Weak transcription	Aorta	Aorta
2	chr3:101129200-101160000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:101133600-101160600	Weak transcription	K562	blood
4	chr3:101141000-101185600	Weak transcription	Right Ventricle	heart
5	chr3:101141200-101160000	Weak transcription	Gastric	stomach
6	chr3:101143600-101160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:101143800-101159800	Weak transcription	Pancreas	Pancrea
8	chr3:101144600-101160200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:101145000-101152000	Weak transcription	Primary T cells from cord blood	blood
10	chr3:101145000-101159800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:101145200-101159800	Weak transcription	Thymus	Thymus
12	chr3:101146000-101185600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:101146200-101159800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:101146200-101160400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:101146400-101151000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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