Variant report

Variant	rs6795148
Chromosome Location	chr3:115725308-115725309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10212425	1.00[EUR][1000 genomes]
rs11915447	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11918675	1.00[EUR][1000 genomes]
rs11922225	1.00[EUR][1000 genomes]
rs13075363	0.87[YRI][hapmap]
rs13315620	0.87[YRI][hapmap]
rs16824392	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1920369	1.00[CEU][hapmap]
rs2141625	1.00[CEU][hapmap]
rs6770422	1.00[EUR][1000 genomes]
rs6780356	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6794899	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9681792	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv829685	chr3:115643521-115812913	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115719600-115742600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:115719800-115732000	Weak transcription	Hela-S3	cervix
3	chr3:115720000-115726800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:115722800-115739400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:115723400-115725400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:115723600-115726200	Enhancers	NHDF-Ad	bronchial
7	chr3:115723600-115726800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:115723600-115726800	Enhancers	NHEK	skin
9	chr3:115723800-115725400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:115724800-115726400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:115724800-115732400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:115725200-115726200	Weak transcription	Osteobl	bone
13	chr3:115725200-115726400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:115725200-115726400	Weak transcription	HMEC	breast
15	chr3:115725200-115730600	Weak transcription	K562	blood
16	chr3:115725200-115735800	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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