Variant report

Variant	rs67965833
Chromosome Location	chr2:210315637-210315638
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11892923	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11898015	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28650191	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58195909	0.93[AFR][1000 genomes]
rs59649490	0.93[AFR][1000 genomes]
rs59999353	0.93[AFR][1000 genomes]
rs60457662	0.93[AFR][1000 genomes]
rs73067004	0.93[AFR][1000 genomes]
rs73069087	0.92[AFR][1000 genomes]
rs73069088	0.92[AFR][1000 genomes]
rs73069096	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1005298	chr2:210277791-210318067	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210306600-210337000	Weak transcription	Aorta	Aorta
2	chr2:210308600-210324200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:210309000-210315800	Weak transcription	Fetal Brain Female	brain
4	chr2:210310200-210316000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:210312800-210322400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:210313000-210315800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:210314800-210317400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:210315200-210316000	Weak transcription	Brain Germinal Matrix	brain
9	chr2:210315400-210315800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:210315400-210316000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:210315400-210316000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:210315600-210318200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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