Variant report

Variant	rs67970395
Chromosome Location	chr6:80414086-80414087
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1504367	1.00[ASN][1000 genomes]
rs62413425	1.00[ASN][1000 genomes]
rs6927296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1018318	chr6:80241029-80465282	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1021143	chr6:80400195-80598163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80382600-80414800	Weak transcription	HUVEC	blood vessel
2	chr6:80396800-80419800	Weak transcription	Right Ventricle	heart
3	chr6:80396800-80420000	Weak transcription	Lung	lung
4	chr6:80397600-80414400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:80397600-80416000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:80397800-80414200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:80397800-80416000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:80397800-80421400	Weak transcription	Pancreas	Pancrea
9	chr6:80398000-80421400	Weak transcription	Stomach Mucosa	stomach
10	chr6:80398200-80421400	Weak transcription	Fetal Lung	lung
11	chr6:80402600-80414400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:80404000-80419800	Weak transcription	Gastric	stomach
13	chr6:80405000-80423800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:80405400-80421000	Weak transcription	Brain Anterior Caudate	brain
15	chr6:80405400-80421400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:80406200-80414200	Weak transcription	Colonic Mucosa	Colon
17	chr6:80406200-80421000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:80406400-80417400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:80406400-80417600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:80408400-80424000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:80408800-80422000	Weak transcription	Fetal Intestine Small	intestine
22	chr6:80409000-80418200	Weak transcription	Fetal Stomach	stomach
23	chr6:80409600-80421400	Weak transcription	Left Ventricle	heart
24	chr6:80409800-80415400	Weak transcription	HepG2	liver
25	chr6:80409800-80417200	Weak transcription	Fetal Intestine Large	intestine
26	chr6:80409800-80421200	Weak transcription	Fetal Brain Female	brain
27	chr6:80409800-80423600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:80410000-80421400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:80410400-80414400	Weak transcription	Liver	Liver
30	chr6:80410600-80416400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:80412600-80414200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:80412800-80417200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:80412800-80417400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:80412800-80419800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:80413400-80415800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:80413600-80415600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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