Variant report

Variant	rs6797693
Chromosome Location	chr3:24237950-24237951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12639293	0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs13064080	0.91[ASN][1000 genomes]
rs1505302	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6786365	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6786367	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6799431	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9811853	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24227400-24238800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:24227800-24239200	Weak transcription	Pancreas	Pancrea
3	chr3:24227800-24254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24231800-24238200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:24232400-24239200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:24234600-24245600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:24235400-24240800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:24236200-24239400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr3:24237000-24238200	Enhancers	NHDF-Ad	bronchial
10	chr3:24237200-24238400	Enhancers	Aorta	Aorta
11	chr3:24237200-24238400	Enhancers	HSMMtube	muscle
12	chr3:24237200-24238600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:24237400-24238800	Enhancers	Colon Smooth Muscle	Colon
14	chr3:24237400-24240000	Weak transcription	Psoas Muscle	Psoas
15	chr3:24237600-24244400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:24237800-24238200	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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