Variant report

Variant	rs6797795
Chromosome Location	chr3:161011424-161011425
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161000404..161005732-chr3:161006848..161011862,5	MCF-7	breast:
2	chr3:160818828..160822903-chr3:161006753..161012586,7	MCF-7	breast:
3	chr3:161009145..161011846-chr3:161137237..161140694,4	MCF-7	breast:
4	chr3:161006306..161018540-chr3:161080036..161092321,36	MCF-7	breast:
5	chr3:161006300..161011924-chr3:161012842..161019057,8	MCF-7	breast:
6	chr3:160990275..160995115-chr3:161003197..161013240,19	MCF-7	breast:
7	chr3:160985097..160988877-chr3:161008569..161012184,4	MCF-7	breast:
8	chr3:161003253..161016100-chr3:161121496..161137189,33	MCF-7	breast:
9	chr3:161006401..161012112-chr3:161031973..161037314,13	MCF-7	breast:
10	chr3:161009839..161012160-chr3:161055660..161057581,2	MCF-7	breast:
11	chr3:161011142..161013690-chr3:161030216..161032723,2	MCF-7	breast:
12	chr3:161009978..161012586-chr3:161040587..161043038,3	MCF-7	breast:
13	chr3:161004827..161016513-chr3:161081728..161095319,56	MCF-7	breast:
14	chr3:161001819..161012846-chr3:161052557..161065154,32	MCF-7	breast:
15	chr3:161009100..161011704-chr3:161125007..161126945,2	MCF-7	breast:
16	chr3:161007555..161015806-chr3:161127103..161142651,19	MCF-7	breast:
17	chr3:161010816..161013600-chr3:161017545..161019552,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6762336	1.00[AMR][1000 genomes]
rs6788526	1.00[AMR][1000 genomes]
rs6801911	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6808086	1.00[AMR][1000 genomes]
rs7616706	1.00[AMR][1000 genomes]
rs7627542	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7627701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1015063	chr3:160918307-161024070	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160994600-161016800	Weak transcription	Right Ventricle	heart
2	chr3:161009800-161013000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:161009800-161016600	Weak transcription	Pancreas	Pancrea
4	chr3:161010000-161013000	Weak transcription	Stomach Mucosa	stomach
5	chr3:161010000-161015000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:161010200-161013000	Weak transcription	Esophagus	oesophagus
7	chr3:161010200-161013000	Weak transcription	HMEC	breast
8	chr3:161010400-161016600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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