Variant report

Variant	rs6798030
Chromosome Location	chr3:68108094-68108095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12486136	0.83[EUR][1000 genomes]
rs12638261	0.82[EUR][1000 genomes]
rs13085443	0.84[EUR][1000 genomes]
rs13314479	0.86[EUR][1000 genomes]
rs13316249	0.87[EUR][1000 genomes]
rs13316279	0.87[EUR][1000 genomes]
rs13317047	0.87[EUR][1000 genomes]
rs13326766	0.86[EUR][1000 genomes]
rs3924581	0.87[EUR][1000 genomes]
rs4129248	0.84[EUR][1000 genomes]
rs4130988	0.85[EUR][1000 genomes]
rs4130989	0.85[EUR][1000 genomes]
rs4130990	0.85[EUR][1000 genomes]
rs62245907	0.80[EUR][1000 genomes]
rs6548962	0.82[EUR][1000 genomes]
rs6770795	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6782017	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6794683	0.82[EUR][1000 genomes]
rs6800369	0.82[EUR][1000 genomes]
rs7427056	0.82[EUR][1000 genomes]
rs7429303	0.85[EUR][1000 genomes]
rs7430568	0.84[EUR][1000 genomes]
rs7433022	0.84[EUR][1000 genomes]
rs7433028	0.84[EUR][1000 genomes]
rs7433087	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7610023	0.84[EUR][1000 genomes]
rs7642259	0.84[EUR][1000 genomes]
rs7650405	0.81[EUR][1000 genomes]
rs9815465	0.84[EUR][1000 genomes]
rs9822658	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870065	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1010231	chr3:67894825-68117879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68105000-68109000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr3:68105400-68108400	Weak transcription	Fetal Intestine Large	intestine
3	chr3:68106000-68108200	Weak transcription	Small Intestine	intestine
4	chr3:68106200-68108200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr3:68106200-68108600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:68106200-68108600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:68106600-68108400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr3:68106600-68108600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:68106800-68108400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:68107400-68108800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:68107600-68108400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:68107800-68108200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:68107800-68108200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:68107800-68108200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:68107800-68109200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr3:68107800-68110200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:68108000-68109200	Enhancers	Primary T cells from cord blood	blood
18	chr3:68108000-68110800	Enhancers	Primary T helper naive cells from peripheral blood	blood

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