Variant report

Variant	rs6798476
Chromosome Location	chr3:111511944-111511945
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs13317985	0.82[JPT][hapmap]
rs13321524	0.82[JPT][hapmap]
rs13322494	0.82[JPT][hapmap]
rs13325336	0.82[JPT][hapmap]
rs3821919	0.82[JPT][hapmap]
rs3922706	0.82[JPT][hapmap]
rs3922707	0.82[JPT][hapmap]
rs4075549	0.82[JPT][hapmap]
rs4276156	0.82[JPT][hapmap]
rs4390898	0.82[JPT][hapmap]
rs4542994	0.82[JPT][hapmap]
rs4634085	1.00[JPT][hapmap]
rs4682313	0.82[JPT][hapmap]
rs6438012	0.82[JPT][hapmap]
rs6762246	0.82[JPT][hapmap]
rs6762572	0.82[JPT][hapmap]
rs6767371	0.89[ASN][1000 genomes]
rs6782513	0.82[JPT][hapmap]
rs6787278	0.82[JPT][hapmap]
rs6789977	0.82[JPT][hapmap]
rs6790521	0.82[JPT][hapmap]
rs6790612	0.82[JPT][hapmap]
rs6790825	0.82[JPT][hapmap]
rs6790977	0.82[JPT][hapmap]
rs6798466	0.88[AFR][1000 genomes]
rs6800047	0.82[JPT][hapmap]
rs6800922	0.82[JPT][hapmap]
rs6802960	0.82[JPT][hapmap]
rs7614433	0.82[JPT][hapmap]
rs7627909	0.82[JPT][hapmap]
rs9842396	0.82[JPT][hapmap]
rs9843288	0.82[JPT][hapmap]
rs9858064	0.82[JPT][hapmap]
rs9862472	0.82[JPT][hapmap]
rs9868898	0.82[JPT][hapmap]
rs9871034	0.82[JPT][hapmap]
rs9880633	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111496000-111514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:111499000-111518800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111501600-111513600	Weak transcription	Pancreas	Pancrea
5	chr3:111501600-111518800	Weak transcription	A549	lung
6	chr3:111504000-111519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:111504200-111515400	Weak transcription	Adipose Nuclei	Adipose
8	chr3:111505400-111520600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:111507000-111513000	Weak transcription	Fetal Stomach	stomach
10	chr3:111507000-111513600	Weak transcription	Liver	Liver
11	chr3:111507600-111515400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:111509400-111518800	Weak transcription	HepG2	liver
13	chr3:111509400-111525800	Weak transcription	Fetal Intestine Small	intestine
14	chr3:111510200-111522000	Weak transcription	Left Ventricle	heart
15	chr3:111511600-111513200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:111511800-111512000	Enhancers	Lung	lung
17	chr3:111511800-111512200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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