Variant report

Variant	rs6798900
Chromosome Location	chr3:81565558-81565559
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12233618	0.81[ASN][1000 genomes]
rs12631775	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12633695	0.83[ASN][1000 genomes]
rs12634278	0.85[ASN][1000 genomes]
rs12638726	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13059815	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13063700	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13086984	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13087181	0.84[ASN][1000 genomes]
rs13088641	0.80[ASN][1000 genomes]
rs1381302	0.83[ASN][1000 genomes]
rs1381303	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1461606	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17018940	0.86[ASN][1000 genomes]
rs17019039	0.83[ASN][1000 genomes]
rs17019042	0.84[ASN][1000 genomes]
rs2307058	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2639611	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34031239	0.85[ASN][1000 genomes]
rs34567512	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35058426	0.94[ASN][1000 genomes]
rs59299387	0.91[ASN][1000 genomes]
rs60231070	0.83[ASN][1000 genomes]
rs6768895	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6769105	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6769140	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6769230	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6783132	0.81[ASN][1000 genomes]
rs6785586	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6785960	0.82[ASN][1000 genomes]
rs6798069	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6800241	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6805105	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7613144	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7615728	0.93[ASN][1000 genomes]
rs7616817	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7622741	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7631349	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7637268	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649028	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7650409	0.81[ASN][1000 genomes]
rs820275	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9811029	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9811835	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815059	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9818063	0.93[ASN][1000 genomes]
rs9820815	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9853643	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867226	0.94[ASN][1000 genomes]
rs9871529	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv933259	chr3:81523854-81730617	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv999587	chr3:81534364-81707800	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv536603	chr3:81534364-81707800	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81535200-81566800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:81535400-81565600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:81535400-81579400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:81535600-81579400	Weak transcription	HUVEC	blood vessel
5	chr3:81540400-81579600	Weak transcription	Right Ventricle	heart
6	chr3:81541800-81568200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:81541800-81579600	Weak transcription	Ovary	ovary
8	chr3:81542000-81568000	Weak transcription	Osteobl	bone
9	chr3:81546400-81581000	Weak transcription	NHLF	lung
10	chr3:81546600-81578000	Weak transcription	HSMM	muscle
11	chr3:81547400-81579800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:81548200-81579400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr3:81548600-81580400	Weak transcription	Psoas Muscle	Psoas
14	chr3:81550000-81579600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:81553400-81579800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:81556200-81579000	Weak transcription	Primary B cells from cord blood	blood
17	chr3:81557400-81577600	Weak transcription	Liver	Liver
18	chr3:81558000-81566000	Weak transcription	Adipose Nuclei	Adipose
19	chr3:81558000-81577600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:81558200-81567600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:81558200-81568000	Weak transcription	NHDF-Ad	bronchial
22	chr3:81558200-81569200	Weak transcription	Dnd41	blood
23	chr3:81558200-81569800	Weak transcription	Left Ventricle	heart
24	chr3:81563200-81571000	Weak transcription	Fetal Heart	heart
25	chr3:81565000-81566000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:81565200-81565600	Strong transcription	Primary hematopoietic stem cells	blood
27	chr3:81565200-81568800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:81565400-81566000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr3:81565400-81568000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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