Variant report

Variant	rs6799954
Chromosome Location	chr3:99534576-99534577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16841712	1.00[AFR][1000 genomes]
rs6784975	1.00[AFR][1000 genomes]
rs6796060	1.00[AFR][1000 genomes]
rs6803576	0.89[AFR][1000 genomes]
rs6805771	1.00[AFR][1000 genomes]
rs9757638	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99524600-99535400	Weak transcription	Brain Anterior Caudate	brain
2	chr3:99527200-99535600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:99530400-99534800	Weak transcription	Psoas Muscle	Psoas
4	chr3:99531200-99535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:99532600-99535600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:99534000-99535400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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