Variant report

Variant	rs6800438
Chromosome Location	chr3:99924774-99924775
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:2052488..2053195-chr3:99924648..99925466,2	MCF-7	breast:
2	chr2:201727914..201730081-chr3:99923240..99926220,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252759	Chromatin interaction
ENSG00000013441	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4928120	0.90[JPT][hapmap];0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv822199	chr3:99915143-99925003	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv1850560	chr3:99920884-99924774	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3503494	chr3:99921612-99926010	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3503491	chr3:99922012-99926010	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3354942	chr3:99922362-99926560	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv3462220	chr3:99922572-99925041	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv3503495	chr3:99922575-99925044	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	esv3503497	chr3:99922583-99925014	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	esv3503492	chr3:99922598-99924975	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	esv3462222	chr3:99922603-99925007	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
13	esv3462217	chr3:99922610-99925004	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
14	esv3462218	chr3:99922618-99924963	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
15	esv3503490	chr3:99922625-99924983	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
16	esv5393	chr3:99922625-99924990	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
17	esv3462221	chr3:99922665-99924941	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
18	esv3503493	chr3:99922673-99924945	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
19	esv3462223	chr3:99922680-99924938	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
20	esv3503498	chr3:99922680-99924938	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
21	esv18161	chr3:99922687-99924933	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
22	esv1843526	chr3:99923302-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
23	esv1846318	chr3:99923302-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
24	esv1847783	chr3:99923302-99924774	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
25	esv1851779	chr3:99923302-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
26	esv1843528	chr3:99923559-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
27	esv1843762	chr3:99923559-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
28	esv1844836	chr3:99923559-99924774	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
29	esv1846525	chr3:99923559-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
30	esv1847301	chr3:99923559-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
31	esv1847770	chr3:99923559-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
32	esv1847892	chr3:99923559-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
33	esv1847967	chr3:99923559-99924774	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
34	esv1848766	chr3:99923559-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
35	nsv591149	chr3:99923559-99924774	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
36	nsv822200	chr3:99924343-99925003	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99917600-99928600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:99917800-99933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:99923000-99928000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:99924200-99924800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:99924400-99928800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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