Variant report

Variant	rs6800746
Chromosome Location	chr3:24309575-24309576
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1449876	1.00[AFR][1000 genomes]
rs1505291	0.91[AFR][1000 genomes]
rs1847664	0.91[AFR][1000 genomes]
rs57339926	0.93[AFR][1000 genomes]
rs58509679	0.93[AFR][1000 genomes]
rs6767526	1.00[AFR][1000 genomes]
rs6782951	0.91[AFR][1000 genomes]
rs6804795	1.00[AFR][1000 genomes]
rs7613985	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24302200-24313800	Weak transcription	Stomach Mucosa	stomach
3	chr3:24302600-24310800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:24302600-24312000	Weak transcription	Aorta	Aorta
5	chr3:24304000-24310800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:24305600-24310400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:24305600-24312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:24306600-24314800	Weak transcription	A549	lung
9	chr3:24306800-24310800	Weak transcription	Fetal Intestine Small	intestine
10	chr3:24308400-24311800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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