Variant report

Variant	rs6801083
Chromosome Location	chr3:111248903-111248904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60198188	1.00[AMR][1000 genomes]
rs73852864	1.00[AMR][1000 genomes]
rs73852870	1.00[AMR][1000 genomes]
rs9681182	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv3946	chr3:111236035-111283038	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3394909	chr3:111242287-111250120	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
6	esv3495322	chr3:111242429-111249881	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv3495321	chr3:111242562-111250210	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
8	esv2466211	chr3:111243007-111249538	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3495319	chr3:111243012-111250160	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
10	nsv513066	chr3:111243020-111249059	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	nsv436392	chr3:111243479-111249604	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
12	esv2113452	chr3:111243500-111249092	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
13	nsv435756	chr3:111243500-111249426	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
14	esv3463474	chr3:111243512-111249092	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3463476	chr3:111243512-111249092	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
16	nsv499010	chr3:111243620-111249034	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3463778	chr3:111243862-111250360	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
18	esv3463779	chr3:111243862-111250360	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
19	nsv591282	chr3:111244944-111249315	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
20	nsv591289	chr3:111246000-111251208	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111236400-111249600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:111243600-111249000	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links