Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:143690596..143692811-chr3:144488722..144490239,2	MCF-7	breast:
2	chr3:143689459..143691462-chr3:144489230..144491259,2	MCF-7	breast:
3	chr3:143694539..143695086-chr3:144489593..144490285,2	MCF-7	breast:
4	chr3:144406468..144407248-chr3:144489335..144490305,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

rSNPs within LD-proxies of this variant (count:4)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv999196	chr3:144487765-144529406	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv536755	chr3:144487765-144529406	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144487800-144492200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:144488000-144491000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:144489000-144490400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:144489000-144491000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:144489000-144491000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:144489200-144491000	Enhancers	HSMMtube	muscle
7	chr3:144489200-144491400	Enhancers	Brain Angular Gyrus	brain
8	chr3:144489200-144491400	Enhancers	Brain Anterior Caudate	brain
9	chr3:144489200-144491600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:144489200-144491600	Enhancers	Brain Hippocampus Middle	brain
11	chr3:144489200-144492400	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:144489400-144490000	Enhancers	Fetal Kidney	kidney
13	chr3:144489400-144490000	Weak transcription	Psoas Muscle	Psoas
14	chr3:144489400-144490400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:144489400-144491600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:144489400-144491600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:144489400-144492200	Enhancers	Brain Substantia Nigra	brain
18	chr3:144489400-144492200	Enhancers	Fetal Heart	heart
19	chr3:144489800-144490000	Enhancers	NHDF-Ad	bronchial
20	chr3:144489800-144492400	Enhancers	HUVEC	blood vessel

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