Variant report

Variant	rs6801948
Chromosome Location	chr3:143530998-143530999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1900644	0.91[AMR][1000 genomes]
rs4593022	0.91[AMR][1000 genomes]
rs6773087	0.91[AMR][1000 genomes]
rs9822158	1.00[CEU][hapmap]
rs9847107	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1001076	chr3:143513526-143547076	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536747	chr3:143513526-143547076	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6801948	C14orf143	trans	lymphoblastoid	RTeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143513600-143533600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:143514200-143544200	Weak transcription	Primary T cells from cord blood	blood
3	chr3:143524200-143533200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:143526400-143531200	Weak transcription	Spleen	Spleen
5	chr3:143526800-143531000	Enhancers	NHDF-Ad	bronchial
6	chr3:143526800-143533000	Weak transcription	Right Atrium	heart
7	chr3:143527400-143531200	Enhancers	Fetal Lung	lung
8	chr3:143528200-143531400	Enhancers	Brain Hippocampus Middle	brain
9	chr3:143528400-143531000	Enhancers	Adipose Nuclei	Adipose
10	chr3:143528400-143533600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:143528600-143531200	Enhancers	Brain Substantia Nigra	brain
12	chr3:143528600-143531800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:143528800-143533400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:143529000-143531400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:143529200-143532000	Enhancers	Primary B cells from cord blood	blood
16	chr3:143529400-143531400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:143529400-143533000	Weak transcription	NHLF	lung
18	chr3:143529600-143532000	Enhancers	Primary B cells from peripheral blood	blood
19	chr3:143529600-143540600	Weak transcription	Brain Angular Gyrus	brain
20	chr3:143529600-143543800	Weak transcription	Stomach Mucosa	stomach
21	chr3:143530000-143533600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:143530000-143538800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr3:143530200-143532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:143530400-143533400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:143530400-143533400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:143530600-143531000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:143530600-143531400	Weak transcription	Fetal Muscle Leg	muscle
28	chr3:143530600-143532800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr3:143530600-143539800	Weak transcription	Ovary	ovary
30	chr3:143530600-143540600	Weak transcription	Placenta	Placenta
31	chr3:143530800-143531000	Enhancers	Brain Anterior Caudate	brain
32	chr3:143530800-143532800	Weak transcription	GM12878-XiMat	blood
33	chr3:143530800-143533000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:143530800-143540800	Weak transcription	Fetal Stomach	stomach

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