Variant report

Variant	rs68019574
Chromosome Location	chr5:92618523-92618524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6863272	1.00[ASN][1000 genomes]
rs6887432	1.00[ASN][1000 genomes]
rs72784417	1.00[ASN][1000 genomes]
rs72784460	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73144886	1.00[ASN][1000 genomes]
rs73144888	1.00[ASN][1000 genomes]
rs7706380	1.00[ASN][1000 genomes]
rs7732043	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882381	chr5:92576494-92649716	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92613200-92619000	Enhancers	Brain Germinal Matrix	brain
2	chr5:92613800-92619000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:92615400-92621200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:92615600-92621200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:92618000-92618800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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