Variant report

Variant	rs6802820
Chromosome Location	chr3:46630759-46630760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10514714	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2102943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34844178	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4117520	0.85[ASN][1000 genomes]
rs62247858	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72622930	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9860011	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46627200-46634600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:46627200-46637000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:46628400-46631000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:46628800-46651000	Weak transcription	Right Atrium	heart
5	chr3:46629200-46630800	Weak transcription	Fetal Thymus	thymus
6	chr3:46630600-46631600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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