Variant report

Variant	rs6802973
Chromosome Location	chr3:67770438-67770439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1037819	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1037820	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12630936	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1459904	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1459905	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1459906	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1459908	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1459909	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2125811	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2362439	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4856797	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4856798	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4856881	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4856882	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4856885	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55833751	0.84[AMR][1000 genomes]
rs6548740	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6548748	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7614322	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7617263	0.88[AMR][1000 genomes]
rs7617448	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7627435	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7637890	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7649792	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9832460	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9843013	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9881852	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705800-67776000	Weak transcription	Ovary	ovary
2	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
3	chr3:67768800-67770800	Enhancers	HUVEC	blood vessel
4	chr3:67769800-67774000	Weak transcription	A549	lung
5	chr3:67770400-67770600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links