Variant report

Variant	rs6803041
Chromosome Location	chr3:143137383-143137384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10446278	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10513201	0.80[JPT][hapmap]
rs11711590	0.88[ASN][1000 genomes]
rs13068683	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs13073481	0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs13073585	0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs13099123	0.90[ASN][1000 genomes]
rs16846341	0.80[JPT][hapmap]
rs16853578	0.80[JPT][hapmap]
rs35004110	0.90[ASN][1000 genomes]
rs4839634	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782465	0.80[JPT][hapmap]
rs6795522	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7624553	0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7627518	0.92[ASN][1000 genomes]
rs7649406	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1011088	chr3:143135891-143163169	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143100600-143142600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143129400-143140600	Weak transcription	NHDF-Ad	bronchial
3	chr3:143133200-143142800	Weak transcription	Primary B cells from cord blood	blood
4	chr3:143136600-143138600	Weak transcription	Aorta	Aorta
5	chr3:143137200-143137600	Enhancers	Dnd41	blood
6	chr3:143137200-143137800	Enhancers	Brain Hippocampus Middle	brain
7	chr3:143137200-143138600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:143137200-143138800	Enhancers	Brain Substantia Nigra	brain
9	chr3:143137200-143139000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr3:143137200-143139200	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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