Variant report

Variant	rs6803141
Chromosome Location	chr3:24560644-24560645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24559026..24561541-chr3:24561700..24563963,5	MCF-7	breast:
2	chr3:24535191..24540424-chr3:24558354..24564929,10	K562	blood:
3	chr3:24532710..24534461-chr3:24559885..24562772,2	MCF-7	breast:
4	chr3:24559612..24561151-chr3:24581369..24583812,2	K562	blood:
5	chr3:24355347..24357297-chr3:24560639..24562872,2	MCF-7	breast:
6	chr3:24555014..24558433-chr3:24558713..24561702,3	MCF-7	breast:
7	chr3:24534014..24541118-chr3:24556364..24565705,22	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272554	Chromatin interaction
ENSG00000228791	Chromatin interaction
ENSG00000265028	Chromatin interaction
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6763505	1.00[AMR][1000 genomes]
rs6789085	1.00[AMR][1000 genomes]
rs6798457	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24550600-24560800	Weak transcription	NHDF-Ad	bronchial
2	chr3:24558600-24560800	Weak transcription	K562	blood
3	chr3:24560200-24560800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr3:24560200-24561200	Enhancers	Psoas Muscle	Psoas
5	chr3:24560400-24560800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
6	chr3:24560400-24560800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
7	chr3:24560400-24561000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr3:24560400-24561000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr3:24560400-24561400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
10	chr3:24560600-24560800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
11	chr3:24560600-24560800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
12	chr3:24560600-24560800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:24560600-24560800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:24560600-24560800	Enhancers	Liver	Liver
15	chr3:24560600-24560800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:24560600-24560800	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr3:24560600-24560800	Bivalent Enhancer	Fetal Thymus	thymus
18	chr3:24560600-24561000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr3:24560600-24561000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:24560600-24561000	Enhancers	Placenta	Placenta
21	chr3:24560600-24561000	Enhancers	Left Ventricle	heart
22	chr3:24560600-24561000	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr3:24560600-24561200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:24560600-24561200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
25	chr3:24560600-24561200	Enhancers	Brain Cingulate Gyrus	brain
26	chr3:24560600-24561200	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr3:24560600-24561200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr3:24560600-24561400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
29	chr3:24560600-24561400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
30	chr3:24560600-24561600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:24560600-24561600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr3:24560600-24561600	Enhancers	Right Atrium	heart
33	chr3:24560600-24562000	Enhancers	Aorta	Aorta
34	chr3:24560600-24562400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr3:24560600-24562400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:24560600-24562600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:24560600-24562600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr3:24560600-24562600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:24560600-24562600	Enhancers	Brain Germinal Matrix	brain
40	chr3:24560600-24562600	Enhancers	Fetal Intestine Small	intestine
41	chr3:24560600-24562600	Flanking Active TSS	HepG2	liver

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