Variant report

Variant	rs6803212
Chromosome Location	chr3:24023653-24023654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23958659..23961020-chr3:24021622..24024161,2	K562	blood:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12489248	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2360610	0.80[AMR][1000 genomes]
rs35899757	0.85[ASN][1000 genomes]
rs35962983	0.97[ASN][1000 genomes]
rs67657770	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6800186	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73036722	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23989200-24033200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:24004000-24023800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:24005600-24032800	Weak transcription	NH-A	brain
4	chr3:24010200-24023800	Weak transcription	Psoas Muscle	Psoas
5	chr3:24010200-24028800	Weak transcription	HUVEC	blood vessel
6	chr3:24010400-24024000	Weak transcription	Brain Angular Gyrus	brain
7	chr3:24018200-24024000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:24018200-24024400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:24018200-24024600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:24018200-24033200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:24018400-24024800	Weak transcription	GM12878-XiMat	blood
12	chr3:24018400-24032200	Weak transcription	Fetal Brain Female	brain
13	chr3:24018400-24032400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:24019200-24024000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:24019400-24024000	Weak transcription	Ovary	ovary
16	chr3:24019400-24024200	Weak transcription	Brain Substantia Nigra	brain
17	chr3:24019400-24025000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:24019400-24025200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr3:24019400-24032800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:24019400-24032800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:24019400-24032800	Weak transcription	Primary T cells from cord blood	blood
22	chr3:24019400-24032800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:24019400-24033200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:24019400-24035400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:24019600-24024800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:24019600-24025000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:24019600-24025200	Weak transcription	Primary B cells from cord blood	blood
28	chr3:24019600-24025200	Weak transcription	Hela-S3	cervix
29	chr3:24019600-24027600	Weak transcription	Fetal Brain Male	brain
30	chr3:24019600-24028600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr3:24019600-24040800	Weak transcription	NHLF	lung
32	chr3:24019800-24024400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:24019800-24024800	Weak transcription	HepG2	liver
34	chr3:24020200-24032800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr3:24020600-24023800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr3:24021400-24032600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:24021400-24032800	Weak transcription	Fetal Heart	heart
38	chr3:24021600-24023800	Weak transcription	HSMMtube	muscle
39	chr3:24021600-24033200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:24021800-24024600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:24021800-24033200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:24021800-24033400	Weak transcription	NHDF-Ad	bronchial
43	chr3:24022400-24023800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
44	chr3:24022600-24023800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:24022600-24023800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:24022600-24023800	Enhancers	Aorta	Aorta
47	chr3:24022600-24023800	Enhancers	Brain Cingulate Gyrus	brain
48	chr3:24022600-24024000	Enhancers	Left Ventricle	heart
49	chr3:24022600-24024200	Enhancers	Right Ventricle	heart
50	chr3:24022800-24023800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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