Variant report

Variant	rs68036376
Chromosome Location	chr14:104690503-104690504
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11628649	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4078149	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4906423	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7142792	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7144831	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7160242	0.84[ASN][1000 genomes]
rs72717026	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050479	chr14:104500427-104805738	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv902331	chr14:104523839-104849219	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1044920	chr14:104528663-104803058	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv470674	chr14:104545284-104710505	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv902345	chr14:104554044-104865071	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	esv1826669	chr14:104554461-105065941	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv1047665	chr14:104577600-104787620	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv1049810	chr14:104577600-105060539	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv542214	chr14:104600431-104694456	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1041696	chr14:104614589-104798502	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv1048001	chr14:104632614-104895474	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	nsv456436	chr14:104657760-104769149	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv566032	chr14:104657760-104769149	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv566033	chr14:104666821-104747384	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv902356	chr14:104686346-104758887	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104686200-104690800	Enhancers	Brain Germinal Matrix	brain
2	chr14:104687000-104692200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:104687200-104691200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr14:104688400-104690600	Enhancers	Pancreas	Pancrea
5	chr14:104688600-104692600	Enhancers	Spleen	Spleen
6	chr14:104688800-104691000	Bivalent Enhancer	Placenta	Placenta
7	chr14:104689000-104690600	Enhancers	Fetal Brain Female	brain
8	chr14:104689200-104691000	Enhancers	Fetal Brain Male	brain
9	chr14:104689200-104691600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:104689400-104691200	Flanking Active TSS	Fetal Muscle Trunk	muscle
11	chr14:104689400-104691400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr14:104689400-104691600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:104689400-104691800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr14:104689400-104691800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr14:104689600-104690800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:104689600-104690800	Enhancers	Small Intestine	intestine
17	chr14:104689800-104690600	Enhancers	Esophagus	oesophagus
18	chr14:104689800-104690600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
19	chr14:104689800-104690800	Enhancers	Primary hematopoietic stem cells	blood
20	chr14:104689800-104690800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:104689800-104691200	Flanking Active TSS	Fetal Lung	lung
22	chr14:104689800-104691400	Flanking Active TSS	Fetal Muscle Leg	muscle
23	chr14:104689800-104691400	Active TSS	Rectal Smooth Muscle	rectum
24	chr14:104689800-104691600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr14:104689800-104691600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr14:104689800-104692400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr14:104689800-104692600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr14:104690000-104690600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
29	chr14:104690000-104690600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:104690000-104690600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
31	chr14:104690000-104690800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
32	chr14:104690000-104690800	Enhancers	K562	blood
33	chr14:104690000-104691200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr14:104690200-104690800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr14:104690200-104691200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr14:104690200-104691600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr14:104690200-104692600	Weak transcription	Lung	lung
38	chr14:104690400-104690600	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr14:104690400-104690600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:104690400-104690600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:104690400-104690600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
42	chr14:104690400-104690600	Flanking Active TSS	Fetal Kidney	kidney
43	chr14:104690400-104690600	Active TSS	Ovary	ovary
44	chr14:104690400-104690600	Active TSS	Right Atrium	heart
45	chr14:104690400-104690800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
46	chr14:104690400-104690800	Bivalent Enhancer	Brain Hippocampus Middle	brain
47	chr14:104690400-104690800	Enhancers	Fetal Intestine Small	intestine
48	chr14:104690400-104690800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
49	chr14:104690400-104691000	Bivalent Enhancer	Colonic Mucosa	Colon
50	chr14:104690400-104691400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links