Variant report

Variant	rs6803666
Chromosome Location	chr3:145051664-145051665
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10084737	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10084738	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11712536	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13096188	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1348661	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1356260	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1356261	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1400270	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1400271	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1400272	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1400275	0.94[AMR][1000 genomes]
rs1445373	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1445376	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1445377	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1445378	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1445379	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1516540	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1516541	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1516542	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1516544	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1562209	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1562210	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1588968	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1588969	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1666489	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1666490	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1731410	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1731411	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2029015	0.87[AMR][1000 genomes]
rs2044381	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2044382	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2044383	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2084066	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2120988	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2218486	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2375720	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2375721	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2375722	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2889167	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs344971	0.94[AMR][1000 genomes]
rs345057	0.89[AMR][1000 genomes]
rs345058	0.89[AMR][1000 genomes]
rs35731231	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4398381	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4398382	0.89[AMR][1000 genomes]
rs4402884	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4402885	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5014205	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5021784	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5021786	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6440347	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6763486	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6765475	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6769694	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6776993	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6790900	0.87[AMR][1000 genomes]
rs6791008	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6801085	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6801527	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6801920	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6803791	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7647336	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7652254	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9809414	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9842967	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9842972	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9842973	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004792	chr3:144658885-145191801	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv877581	chr3:144815506-145181910	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv998288	chr3:144815560-145147528	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877583	chr3:144880588-145066106	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv998876	chr3:144946062-145228614	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv877587	chr3:144949453-145355433	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv877588	chr3:144962452-145053828	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877589	chr3:144962452-145066106	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv877591	chr3:144968890-145053828	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv877592	chr3:144968890-145066106	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv877593	chr3:144968890-145092747	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv460877	chr3:144968890-145174583	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv591932	chr3:144968890-145174583	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv877594	chr3:144979382-145053828	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv877595	chr3:144979382-145066106	Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1001500	chr3:144992948-145211714	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv470927	chr3:144994727-145151554	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv1003916	chr3:144996733-145146269	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv1001371	chr3:145028362-145124968	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145051000-145052000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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