Variant report

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1471738	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1507435	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2627547	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795427	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906380	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2754039	chr3:100882310-100981310	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100904600-100914600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:100910800-100913400	Enhancers	Osteobl	bone
3	chr3:100911800-100913400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:100911800-100913400	Enhancers	NHEK	skin
5	chr3:100912000-100913800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:100912400-100913400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:100912400-100913400	Enhancers	NHDF-Ad	bronchial
8	chr3:100912400-100913600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:100912600-100913400	Enhancers	HMEC	breast
10	chr3:100912600-100913800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:100912600-100916400	Enhancers	HSMMtube	muscle
12	chr3:100912800-100913400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:100912800-100913400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:100913000-100914200	Weak transcription	HUVEC	blood vessel
15	chr3:100913000-100914400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:100913000-100914600	Weak transcription	A549	lung
17	chr3:100913000-100914800	Weak transcription	HSMM	muscle
18	chr3:100913200-100914600	Weak transcription	Hela-S3	cervix
19	chr3:100913200-100914800	Weak transcription	NH-A	brain
20	chr3:100913200-100922200	Weak transcription	NHLF	lung

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