Variant report

Variant	rs68039198
Chromosome Location	chr12:73656103-73656104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:73655588..73656464-chr16:85628476..85629004,2	MCF-7	breast:
2	chr12:73655095..73657152-chr20:52197004..52199032,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11612862	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11613100	0.95[ASN][1000 genomes]
rs11613527	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11615150	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11615274	0.95[ASN][1000 genomes]
rs55684289	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55797334	0.97[ASN][1000 genomes]
rs55854868	0.95[ASN][1000 genomes]
rs55914650	0.97[ASN][1000 genomes]
rs56037880	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56046311	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56281792	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56293675	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56337910	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59215839	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60463174	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66931184	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164776	0.95[ASN][1000 genomes]
rs73166520	0.95[ASN][1000 genomes]
rs73166527	0.95[ASN][1000 genomes]
rs73166550	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73166569	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73167526	0.93[ASN][1000 genomes]
rs73170832	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73172923	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs925794	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756127	chr12:73278611-73765553	Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2752680	chr12:73278611-73778216	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2752855	chr12:73376845-73745938	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv3325666	chr12:73483671-73664341	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv899274	chr12:73510254-73875790	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv2754130	chr12:73573245-73778216	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1046165	chr12:73591534-73677074	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2754146	chr12:73601464-73765553	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2754962	chr12:73603758-73684588	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2752618	chr12:73603758-73765553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv2752624	chr12:73604504-73684588	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv832456	chr12:73620419-73775946	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv899276	chr12:73631083-73702955	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:73656000-73657800	Enhancers	Liver	Liver

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